Celebrating the defence
Stine Hansen with the defended her PhD thesis “Leveraging Supervoxels for Medical Image Volume Segmentation With Limited Supervision” on Dec. 16th at UiT The Arctic University of Norway.
The focus of Stine Hansens thesis is on the development of new ML algorithms for medical image segmentation with limited supervision. In particular, completely unsupervised solutions to lung tumor segmentation and solutions that only require a few labeled samples to perform organ segmentation (few-shot learning) are proposed. To exploit the data-specific opportunities of medical images, automatically generated supervoxels are exploited in various ways to solve key challenges related to the task.
.jpg)
Evaluation Committee
Supervisors
The majority of existing methods for machine learning-based medical image segmentation are supervised models that require large amounts of fully annotated images. These types of datasets are typically not available in the medical domain and are difficult and expensive to generate. A wide-spread use of machine learning based models for medical image segmentation therefore requires the development of data-efficient algorithms that only require limited supervision. To address these challenges, this thesis presents new machine learning methodology for unsupervised lung tumor segmentation and few-shot learning based organ segmentation. When working in the limited supervision paradigm, exploiting the available information in the data is key. The methodology developed in this thesis leverages automatically generated supervoxels in various ways to exploit the structural information in the images. The work on unsupervised tumor segmentation explores the opportunity of performing clustering on a population-level in order to provide the algorithm with as much information as possible. To facilitate this population-level across-patient clustering, supervoxel representations are exploited to reduce the number of samples, and thereby the computational cost. In the work on few-shot learning-based organ segmentation, supervoxels are used to generate pseudo-labels for self-supervised training. Further, to obtain a model that is robust to the typically large and inhomogeneous background class, a novel anomaly detection-inspired classifier is proposed to ease the modelling of the background. To encourage the resulting segmentation maps to respect edges defined in the input space, a supervoxel-informed feature refinement module is proposed to refine the embedded feature vectors during inference. Finally, to improve trustworthiness, an architecture-agnostic mechanism to estimate model uncertainty in few-shot segmentation is developed. Results demonstrate that supervoxels are versatile tools for leveraging structural information in medical data when training segmentation models with limited supervision.
The University Hospital of North Norway, partner in Visual Intelligence, in the media: "AI is the path forward". Read the full story (in Norwegian).
Fjernstyrte undervannsroboter er et viktig verktøy i kartlegging, utforskning og overvåkning av verdens havområder. I slutten av april fikk 22 elever fra videregående skoler i Troms og Finnmark designe, bygge og anvende fjernstyrte undervannsroboter.
A pitch day was organized at UiT for to connect students with companies for external master’s projects and job opportunities in computer science and machine learning.
Master thesis on automation in the fish processing industry using machine learning by Josten Henriksen.
Prof. Pierre Baldi visited Visual Intelligence in Tromsø, February 16-17, 2023. The two days were filled with fruitful meetings on potential scientific collaboration between UCI and Visual Intelligence.
Machine learning phd students from Visual Intelligence present at UiT The Arctic University of Norway's open day 2023, for recruitment of new students.
VIGS is Visual Intelligence's social and scientific initiative for phd students, postdocs and early career researchers! May 3-5 VIGS will organize a joint trip to UiT's field station in Indre Troms. Sign up and read more about the social and scientific program in out event!
The Northern Lights Deep Learning Conference, Tromsø, January 9th to 13th, was a great gathering of 250 deep learning researchers.
7-8 November VIGS organized a successful gathering for early career researchers in Tromsø. The program was filled with both a social and technical program and gathered around 20 researchers from the research partners in Visual Intelligence.
We had the great pleasure of hosting Lars Kai Hansen, Technical University of Denmark, and Irina Voiculescu, University of Oxford, at the Visual Intelligence centre in Tromsø.
Kristoffer Wickstrøm defended his PhD thesis “Advancing deep learning with emphasis on data-driven healthcare” on Oct 28 at UiT The Arctic University of Norway.
PhD student Srishti Gautam in Visual Intelligence and her collaborators from UiT The Arctic University of Norway and Technical University of Berlin got their paper "ProtoVAE: A Trustworthy Self-Explainable Prototypical Variational Model" accepted to NeurIPS 2022!
Developing deep learning-based AI for quantitative PET imaging. Groups joining forces and a new innovation project.
Suaiba Salahuddin, Stine Hansen, and Sristhi Gautam won the best paper award at the 11th Color and Visual Computing Symposium, Sept. 8-9, 2022!
It was absolutely packed with people when Visual Intelligence, NORA, and CAIR/UIA invited a strong panel to debate the future of healthcare with AI at Arendalsuka 2022!
.jpeg)
Ane Blazquez Garcia, University of the Basque Country and the Ikerlan research institute, visited Visual Intelligence in the fall of 2021. Partially based on work conducted during this visit, she successfully defended her PhD thesis on July 27th 2022. Congratulations!
Updated program and call for papers for the Northern Lights Deep Learning Conference is now available.
Visual Intelligence had the great pleasure of hosting professor Jose Principe from the University of Florida for a 3-day visit in Tromsø June 29 - July 1, 2022.
The workshop brought together partners from the Cancer Registry and the University Hospital of North Norway, as well as researchers from the wider consortium.
Srishti Gautam, PhD student in Visual Intelligence, at UiT received the Best Poster award at the NORA annual conference 2022